cowidev.megafile

• cowidev.megafile.export
  • cowidev.megafile.export.annotations
    • AnnotatorInternal
      • AnnotatorInternal._add_annotations()
      • AnnotatorInternal._remove_config_duplicates()
      • AnnotatorInternal.add_annotations()
      • AnnotatorInternal.config
      • AnnotatorInternal.config_flat_to_nested()
      • AnnotatorInternal.config_nested_to_flat()
      • AnnotatorInternal.from_yaml()
      • AnnotatorInternal.insert_annotation()
      • AnnotatorInternal.streams
      • AnnotatorInternal.to_yaml()
    • add_annotations_countries_100_percentage()
  • cowidev.megafile.export.html
    • generate_htmls()
    • pipe_vax_locations_to_html()
  • cowidev.megafile.export.internal
    • add_fully_vaccinated_no_boosters()
    • add_partially_vaccinated()
    • add_total_vaccinations_no_boosters()
    • country_vax_data_partly()
    • create_internal()
    • df_to_columnar_json()
    • fillna_boosters_till_valid()
  • cowidev.megafile.export.public
    • create_dataset()
    • create_latest()
    • df_to_dict()
    • df_to_json()
  • cowidev.megafile.export.readme
    • _generate_category_notes()
    • _generate_category_notes_top()
    • generate_readme()
    • get_excluded_locations()
    • get_num_countries_by_iso()
    • get_num_countries_by_location()
    • get_num_countries_jhu()
    • get_placeholder()
    • get_variable_section()
    • load_macro_df()
  • cowidev.megafile.export.status
    • generate_status()
    • get_placeholder()
    • load_status_get()
    • load_status_process()
    • create_dataset()
    • create_internal()
    • create_latest()
    • generate_htmls()
    • generate_readme()
    • generate_status()
• cowidev.megafile.steps
  • cowidev.megafile.steps.cgrt
    • clean_cgrt()
    • get_cgrt()
  • cowidev.megafile.steps.core
    • get_base_dataset()
  • cowidev.megafile.steps.hosp
    • get_hosp()
  • cowidev.megafile.steps.jhu
    • add_cumulative_deaths_last12m()
    • get_jhu()
  • cowidev.megafile.steps.macro
    • add_macro_variables()
  • cowidev.megafile.steps.reprod
    • get_reprod()
  • cowidev.megafile.steps.test
    • get_testing()
  • cowidev.megafile.steps.variants
    • get_variants()
    • read()
  • cowidev.megafile.steps.vax
    • _add_rolling()
    • add_rolling_vaccinations()
    • get_vax()
  • cowidev.megafile.steps.xm
    • _add_last12m_to_metric()
    • add_excess_mortality()
    • add_cumulative_deaths_last12m()
    • add_excess_mortality()
    • add_macro_variables()
    • add_rolling_vaccinations()
    • get_base_dataset()

cowidev.megafile.__main__

Merges all COVID-19 data into a ‘megafile’; - Follows a long format of 1 row per country & date, and variables as columns; - Published in CSV, XLSX, and JSON formats; - Includes derived variables that can’t be easily calculated, such as X per capita; - Includes country ISO codes in a column next to country names.

cowidev.megafile.generate

cowidev.megafile.generate.generate_megafile(logger)

Generate megafile data.

cowidev.megafile.generate.generate_timestamp()